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You can buy many of these probe set direct from Arbor Biosciences in the form of a capture kit.Arbor Biosciences has even made a discounted "pilot" sized kit available for labs who want to do some test enrichments.
You can identify UCEs in organismal genome sequences by aligning several genomes to each other, scanning the resulting genome alignments for areas of very high (95-100%) sequence conservation, and filtering on user-defined criteria, such as length (e.g., Bejerano et al.
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UCEs were first described in a wonderful manuscript by Gil Bejerano et al.